SD supported research articles (sorted by years)

To the survey (2011-2015) on the high Impact Factor articles supported by Scientific Diving

List 2015-2020 under contruction

REFERENCE ARTICLES AND BOOKS
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2016

Abelli, L., et al. Marine geological and archaeological evidence of a possible pre-Neolithic site in Pantelleria Island, Central Mediterranean Sea. Geological Society, London, Special Publications 411, 97-110 (2016).

zotero:itemfields_key	NGMWT3MQ
Version	397
Type	Article de revue
Titre	Marine geological and archaeological evidence of a possible pre-Neolithic site in Pantelleria Island, Central Mediterranean Sea
Auteur	Abelli, Leonardo
Auteur	Agosto, Maria Vittoria
Auteur	Casalbore, Daniele
Auteur	Romagnoli, Claudia
Auteur	Bosman, Alessandro
Auteur	Antonioli, Fabrizio
Auteur	Pierdomenico, Martina
Auteur	Sposato, Andrea
Auteur	Chiocci, Francesco Latino
Résumé	Recent underwater archaeological surveys recovered hundreds of flint artefacts between depths of 18 and 21 m at Cala Tramontana, a small bay located in the eastern part of Pantelleria Island. Most of the flint artefacts indicate debitage, and are characterized by cores and flakes without any specific morphology. Different lithic tools were also identified, such as fragments of blades, truncations, end-scrapers, points and crested blades. An initial hypothesis is that this lithic industry represents the oldest traces of human visitation to the island, possibly related to the exploitation of the nearby obsidian source, and favoured because of the sheltered coastal configuration of Cala Tramontana and Cala Levante with respect to the dominant winds and related storms. However, the present-day coastal setting in the bay is rather inhospitable, with high cliffs and difficult marine access. In contrast, palaeo-landscape reconstructions by means of high-resolution multibeam bathymetry reveal the possible presence of a small palaeobeach in the inner part of the bay when the sea level was 15 m lower than at present. By comparing this palaeo-sea level with the eustatic curve (and by excluding possible vertical movements), we roughly estimate an age of the lithic industry of 9.6–7.7 cal ka BP.
Publication	Geological Society, London, Special Publications
Volume	411
Numéro	1
Pages	97-110
Date	2016
Langue	en
DOI	10.1144/SP411.6
ISSN	0305-8719, 2041-4927
URL	http://sp.lyellcollection.org/lookup/doi/10.1144/SP411.6
Consulté le	2017-05-03T09:54:34Z
Catalogue de bibl.	CrossRef
zotero:itemfields_collections	Array
Date d'ajout	2017-05-03T09:54:34Z
Modifié le	2017-05-03T09:54:52Z

Aleynik, D., Dale, A. C., Porter, M. & Davidson, K. A high resolution hydrodynamic model system suitable for novel harmful algal bloom modelling in areas of complex coastline and topography. Harmful Algae 53, 102-117 (2016).

zotero:itemfields_key	9UFI4V5P
Version	783
Type	Article de revue
Titre	A high resolution hydrodynamic model system suitable for novel harmful algal bloom modelling in areas of complex coastline and topography
Auteur	Aleynik, Dmitry
Auteur	Dale, Andrew C.
Auteur	Porter, Marie
Auteur	Davidson, Keith
Publication	Harmful Algae
Volume	53
Pages	102-117
Date	03/2016
Langue	en
DOI	10.1016/j.hal.2015.11.012
ISSN	15689883
URL	https://linkinghub.elsevier.com/retrieve/pii/S1568988315001687
Consulté le	2018-11-27T10:18:30Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-11-27T10:18:30Z
Modifié le	2018-11-27T10:18:30Z

American Academy of Underwater Sciences, A. A. U. S. AAUS Scientific Diving History and Regulations. (2016).à

zotero:itemfields_key	VTQSZ5NT
Version	444
Type	Présentation
Titre	AAUS Scientific Diving History and Regulations
Présentateur	American Academy of Underwater Sciences, AAUS
Date	2016
URL	http://www.scaquarium.org/wp-content/uploads/2015/11/AAUS-Scientific-Diving-History-2016-1.pdf
zotero:itemfields_collections	Array
Date d'ajout	2017-05-04T12:13:48Z
Modifié le	2017-05-04T12:16:55Z

Bardout, G. Manuel technique de plongée polaire. (Ulmer, 2016).

zotero:itemfields_key	FTFHZPDC
Version	921
Type	Livre
Titre	Manuel technique de plongée polaire
Auteur	Bardout, Ghislain
Lieu	Paris
Éditeur	Ulmer
Date	2016
Langue	French
ISBN	978-2-84138-809-7
URL
Catalogue de bibl.	Open WorldCat
Extra	OCLC: 944325109
zotero:itemfields_collections	Array
Date d'ajout	2019-09-28T14:13:13Z
Modifié le	2019-09-28T14:13:13Z

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Articles publiés dans cette rubrique

lundi 17 février 2020
par Jean-Pierre FERAL

High Impact Factor articles : list 2015-2020

Number of articles : 51, on 2020 March 27
1) Alonso, I., Yuval, M., Eyal, G., Treibitz, T. & Murillo, A.C. (2019) CoralSeg : Learning coral segmentation from sparse annotations. Journal of Field Robotics 36, 1456–1477. https://doi.org/10.1002/rob.21915 2) Arivalagan, J., Yarra, T., Marie, (...)

samedi 6 mai 2017
par Jean-Pierre FERAL

Publications supported by scientific diving

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To a survey [2015] on the high Impact Factor articles supported by Scientific Diving
2019
David, R., et al. Lessons from photo analyses of Autonomous Reef Monitoring Structures as tools to detect (bio-)geographical, spatial, and environmental (...)

lundi 1er mai 2017
par Jean-Pierre FERAL

To highlight benefits of scientific diving (articles in IF>5 journals)

A survey is being done in 2015, at a European scale, to gather recent (5 yrs) articles which were depending on the use of scientific diving (collection, observation, experimentation), published in journals of high IF (at least 5).
To illustrate this a leaflet has been distributed in December (...)

jeudi 4 mai 2017
par Jean-Pierre FERAL

Scientific diving supported articles (sorted by years)

To a survey on the high Impact Factor articles supported by Scientific Diving (2015)
REFERENCE ARTICLES AND BOOKS Afficher/masquer les détails = Show/hide details
When you are logged in [authorized members],
you can access a contributors list here
you can browse the total references or (...)

zotero:itemfields_key	4I6IZSCI
Version	909
Type	Rapport
Titre	L’ESDP – European Scientific Diving Panel - est désormais supporté par MARS network, le réseau européen des instituts de recherche et stations marines
Auteur	Féral, Jean-Pierre
N° du rapport	Newsletter 4
Titre de la coll.	La Lettre du CNPS, Comité National pour la Plongée Scientifique
Date	04/2019
Pages	12-15
Langue	Français
URL
Extra	doi: 10.13140/RG.2.2.26135.62885
Date d'ajout	2019-04-23T14:37:05Z
Modifié le	2019-04-23T14:41:12Z

zotero:itemfields_key	P9S42VTU
Version	619
Type	Article de colloque
Titre	At the heart of the coral triangle in West Papua : an Indonesian-French scientific exploration of a white area with closed-circuit rebreathers (eCCR) [poster]
Auteur	Hocdé, Régis
Collaborateur	Menou, Jean-
Collaborateur	Pouyaud, Laurent
Collaborateur	Surukawy, Amir M.
Collaborateur	Vimono, Indra B.
Résumé	The Bird’s Head Isthmus connecting the Bird’s Head Peninsula with the rest of New Guinea is one of the last pristine areas remaining in Southeast Asia. Dominantly covered by limestone karsts, this vast region of West Papua (Indonesia) is still a terra incognita. At the heart of the coral triangle, the Kumawa and Lengguru limestone karsts and reef slopes are today a major biodiversity reservoir with high levels of endemism. The French-Indonesian ‘Lengguru 2014’ expedition was headed by IRD and P2O-LIPI, RCB-LIPI and POLTEK. Exploration and sampling effort were concentrated on several reef slopes from -100 m to the surface using closed-circuit rebreathers (eCCR) and open circuits. ‘Lengguru 2014’ expedition was the first French oceanographic campaign organized by a national and academic research organization to use the rebreather. The scientific diving operations were made under the responsibility of the French research institute IRD. Nevertheless, the French regulation presently only allows the use of rebreather for recreational uses. The main author participates as an expert for the Ministry of Labor to reform the law with specific applications to scientific purposes. This scientific expedition was therefore permitted in phase advance. The Lengguru 2014 expedition was organized in complete autonomy for 6 weeks. It required extensive preparation and logistics, as well as some strengthened safety procedures for scientific dives. Forty vertical transects have been performed from -100 meters depth to the surface, silently with great autonomy and optimized decompression. The exploration of flooded karsts by cave diving has been also possible with rebreather. It does not bubble and offers such autonomy. The use of eCCR offers together scientific benefits and enhanced diving safety. The ‘Lengguru 2014’ Expedition provided a science-based assessment of functional, genetic and morphological diversity for several marine biotas (echinoderms, hard corals, gorgonians, mollusks) with prime importance for biodiversity conservation.
Date	2017/03/22-23
Intitulé du colloque	European Conference on Scientific Diving, 3.
Lieu	Funchal (PORTUGAL)
Pages	1
Langue	English
DOI	fdi:010069727
URL	http://www.documentation.ird.fr/hor/fdi:010069727
Extra	Hocdé Régis, Menou Jean-Louis, Pouyaud Laurent, Surukawy A.M., Vimono I.B. (2017). At the heart of the coral triangle in West Papua : an Indonesian-French scientific exploration of a white area with closed-circuit rebreathers (eCCR) [poster]. Montpellier : IRD, 1 p. European Conference on Scientific Diving, 3., Funchal (POR), 2017/03/22-23.
Marqueurs	biodiversity · coral triangle · eCCR · indonesia · rebreather · scientific diving · west papua
zotero:itemfields_collections	Array
Date d'ajout	2017-07-31T11:08:50Z
Modifié le	2017-07-31T11:14:43Z

zotero:itemfields_key	EUPZ87EH
Version	578
Type	Article de revue
Titre	An integrated method to evaluate and monitor the conservation state of coralligenous habitats: The INDEX-COR approach
Auteur	Sartoretto, Stéphane
Auteur	Schohn, Thomas
Auteur	Bianchi, Carlo Nike
Auteur	Morri, Carla
Auteur	Garrabou, Joaquim
Auteur	Ballesteros, Enric
Auteur	Ruitton, Sandrine
Auteur	Verlaque, Marc
Auteur	Daniel, Boris
Auteur	Charbonnel, Eric
Auteur	Blouet, Sylvain
Auteur	David, Romain
Auteur	Féral, Jean-Pierre
Auteur	Gatti, Giulia
Résumé	A new method based on photographic sampling coupled with in situ observations was applied to 53 stations along the French Mediterranean coast, to assess the integrity of coralligenous reefs affected by different levels of anthropogenic pressure. The conservation state of the assemblages characterizing these habitats was then assessed by an index – the INDEX-COR – that integrates three metrics: (i) the sensitivity of the taxa to organic matter and sediment deposition, (ii) the observable taxonomic richness, and (iii) the structural complexity of the assemblages. The sensitivity of INDEX-COR was tested and showed good correlation with the Level of Pressure calculated for each station according to expert judgment and field observations.
Publication	Marine Pollution Bulletin
Date	05/2017
Abrév. de revue	Marine Pollution Bulletin
Langue	English
DOI	10.1016/j.marpolbul.2017.05.020
ISSN	0025-326X
Titre abrégé	An integrated method to evaluate and monitor the conservation state of coralligenous habitats
URL	http://www.sciencedirect.com/science/article/pii/S0025326X17304071
Consulté le	2017-05-16T09:19:17Z
Catalogue de bibl.	ScienceDirect
Marqueurs	Coralligenous reef · Ecological indicator · Ecological status · Mediterranean Sea · Seafloor integrity
zotero:itemfields_collections	Array
Date d'ajout	2017-05-16T09:19:17Z
Modifié le	2017-05-16T09:20:08Z

SD supported research articles (sorted by years)

2019

2018

2017

2016

Articles publiés dans cette rubrique

High Impact Factor articles : list 2015-2020

Publications supported by scientific diving

To highlight benefits of scientific diving (articles in IF>5 journals)

Scientific diving supported articles (sorted by years)

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zotero:itemfields_key	8R63UF3M
Version	890
Type	Article de revue
Titre	Lessons from photo analyses of Autonomous Reef Monitoring Structures as tools to detect (bio-)geographical, spatial, and environmental effects
Auteur	David, Romain
Auteur	Uyarra, Maria C.
Auteur	Carvalho, Susana
Auteur	Anlauf, Holger
Auteur	Borja, Angel
Auteur	Cahill, Abigail E.
Auteur	Carugati, Laura
Auteur	Danovaro, Roberto
Auteur	De Jode, Aurélien
Auteur	Feral, Jean-Pierre
Auteur	Guillemain, Dorian
Auteur	Martire, Marco Lo
Auteur	D'Avray, Laure Thierry De Ville
Auteur	Pearman, John K.
Auteur	Chenuil, Anne
Publication	Marine Pollution Bulletin
Volume	141
Pages	420-429
Date	04/2019
Langue	en
DOI	10.1016/j.marpolbul.2019.02.066
ISSN	0025326X
URL	https://linkinghub.elsevier.com/retrieve/pii/S0025326X19301663
Consulté le	2019-03-08T01:52:42Z
Catalogue de bibl.	Crossref
Date d'ajout	2019-03-08T01:52:42Z
Modifié le	2019-03-08T01:52:42Z

zotero:itemfields_key	ZDHBGQ93
Version	876
Type	Article de revue
Titre	Benthic responses to an Antarctic regime shift: food particle size and recruitment biology
Auteur	Dayton, Paul K.
Auteur	Jarrell, Shannon C.
Auteur	Kim, Stacy
Auteur	Ed Parnell, P.
Auteur	Thrush, Simon F.
Auteur	Hammerstrom, Kamille
Auteur	Leichter, James J.
Publication	Ecological Applications
Volume	29
Numéro	1
Pages	e01823
Date	01/2019
Langue	en
DOI	10.1002/eap.1823
ISSN	10510761
Titre abrégé	Benthic responses to an Antarctic regime shift
URL	http://doi.wiley.com/10.1002/eap.1823
Consulté le	2019-01-18T13:17:38Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2019-01-18T13:17:38Z
Modifié le	2019-01-18T13:17:38Z

zotero:itemfields_key	56N62M95
Version	910
Type	Article de revue
Titre	From seascape ecology to population genomics and back. Spatial and ecological differentiation among cryptic species of the red algae Lithophyllum stictiforme/L. cabiochiae, main bioconstructors of coralligenous habitats
Auteur	De Jode, Aurélien
Auteur	David, Romain
Auteur	Haguenauer, Anne
Auteur	Cahill, Abigail E.
Auteur	Erga, Zinovia
Auteur	Guillemain, Dorian
Auteur	Sartoretto, Stéphane
Auteur	Rocher, Caroline
Auteur	Selva, Marjorie
Auteur	Le Gall, Line
Auteur	Féral, Jean-Pierre
Auteur	Chenuil, Anne
Publication	Molecular Phylogenetics and Evolution
Volume	137
Pages	104-113
Date	08/2019
Langue	en
DOI	10.1016/j.ympev.2019.04.005
ISSN	10557903
URL	https://linkinghub.elsevier.com/retrieve/pii/S105579031830602X
Consulté le	2019-05-10T11:22:03Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2019-05-10T11:22:03Z
Modifié le	2019-05-10T11:22:03Z

zotero:itemfields_key	3CXM6IVQ
Version	916
Type	Article de revue
Titre	Comparison of diver operated stereo-video and visual census to assess targeted fish species in Mediterranean marine protected areas
Auteur	Grane-Feliu, Xavier
Auteur	Bennett, Scott
Auteur	Hereu, Bernat
Auteur	Aspillaga, Eneko
Auteur	Santana-Garcon, Julia
Publication	Journal of Experimental Marine Biology and Ecology
Volume	520
Pages	151205
Date	11/2019
Langue	en
DOI	10.1016/j.jembe.2019.151205
ISSN	00220981
URL	https://linkinghub.elsevier.com/retrieve/pii/S0022098119300838
Consulté le	2019-08-29T11:07:37Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2019-08-29T11:07:37Z
Modifié le	2019-08-29T11:07:37Z

zotero:itemfields_key	CALRN2SL
Version	926
Type	Article de revue
Titre	Juvenile morphology of the large Antarctic canopy-forming brown alga, Desmarestia menziesii J. Agardh
Auteur	Küpper, Frithjof C.
Auteur	Amsler, Charles D.
Auteur	Morley, Simon
Auteur	de Reviers, Bruno
Auteur	Reichardt, Aurelia
Auteur	Peck, Lloyd S.
Auteur	Peters, Akira F.
Publication	Polar Biology
Date	2019-9-22
Langue	en
DOI	10.1007/s00300-019-02584-3
ISSN	0722-4060, 1432-2056
URL	http://link.springer.com/10.1007/s00300-019-02584-3
Consulté le	2019-10-11T10:29:47Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2019-10-11T10:29:47Z
Modifié le	2019-10-11T10:29:47Z

zotero:itemfields_key	SZ98JEPI
Version	676
Type	Article de revue
Titre	Geospatial modelling and map analysis allowed measuring regression of the upper limit of Posidonia oceanica seagrass meadows under human pressure
Auteur	Montefalcone, Monica
Auteur	Vacchi, Matteo
Auteur	Archetti, Renata
Auteur	Ardizzone, Giandomenico
Auteur	Astruch, Patrick
Auteur	Bianchi, Carlo Nike
Auteur	Calvo, Sebastiano
Auteur	Criscoli, Alessandro
Auteur	Fernández-Torquemada, Yolanda
Auteur	Luzzu, Filippo
Auteur	Misson, Gloria
Auteur	Morri, Carla
Auteur	Pergent, Gérard
Auteur	Tomasello, Agostino
Auteur	Ferrari, Marco
Publication	Estuarine, Coastal and Shelf Science
Volume	217
Pages	148-157
Date	02/2019
Langue	en
DOI	10.1016/j.ecss.2018.11.006
ISSN	02727714
URL	https://linkinghub.elsevier.com/retrieve/pii/S0272771417310892
Consulté le	2018-11-23T11:25:43Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-11-23T11:25:44Z
Modifié le	2018-11-23T11:25:44Z

zotero:itemfields_key	5L9LMKQB
Version	915
Type	Article de revue
Titre	An Alien Invader is the Cause of Homogenization in the Recipient Ecosystem: A Simulation-Like Approach
Auteur	Morri, Carla
Auteur	Montefalcone, Monica
Auteur	Gatti, Giulia
Auteur	Vassallo, Paolo
Auteur	Paoli, Chiara
Auteur	Bianchi, Carlo Nike
Publication	Diversity
Volume	11
Numéro	9
Pages	146
Date	2019-08-26
Langue	en
DOI	10.3390/d11090146
ISSN	1424-2818
Titre abrégé	An Alien Invader is the Cause of Homogenization in the Recipient Ecosystem
URL	https://www.mdpi.com/1424-2818/11/9/146
Consulté le	2019-08-26T17:59:25Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2019-08-26T17:59:25Z
Modifié le	2019-08-26T17:59:25Z

zotero:itemfields_key	4KGXUQ7P
Version	901
Type	Article de colloque
Titre	Changement climatique et suivi de la biodiversité marine côtière aux Iles Kerguelen. {15<sup>e</sup> Rencontres Bourgogne-Franche-Comté Nature, Changement climatique, humanité et biodiversité}, {{ {Revue Scientifique Bourgogne-Franche-Comté Nature} }} 29: 273-284. 〈hal-02097586〉
Auteur	Saucède, Thomas
Auteur	Motreuil, Sébastien
Auteur	Mathieu, Olivier
Auteur	Santoni, Anne-Lise
Auteur	Couette, Sébastien
Auteur	Féral, Jean-Pierre
Résumé	Résumé Les habitats marins côtiers des îles subantarctiques françaises concentrent une biodiversité originale qui est aujourd’hui confrontée à des changements environnementaux dont les effets sont encore mal cernés. Comprendre l’impact de ces changements et la réponse des écosystèmes implique de mieux les connaître mais aussi d’établir un suivi régulier et à long terme sur le terrain. Le programme Proteker, n°1044 de l’Institut polaire français Paul-Émile Victor, a été développé en partenariat avec la réserve naturelle nationale des Terres australes françaises dans le but d’établir un observatoire de la biodiversité marine côtière aux Îles Kerguelen et d’y évaluer l’effet des changements environnementaux. Les études sont réalisées à différentes échelles, des espèces aux communautés et aux habitats sous-marins par des approches pluridisciplinaires qui comprennent mesures hydrographiques, cartographie d’habitats et inventaires d’espèces, analyses génétiques, écophysiologiques et trophiques. Ce programme a pour ambition de fournir des critères scientifi ques aux gestionnaires de la réserve pour la mise en oeuvre des politiques de conservation et l’application des plans de gestion. Abstract Nearshore marine habitats of the French sub-Antarctic islands concentrate a rich and unique biodiversity that is currently facing climate change and its still not well-understood and multifaceted effects. Understanding the impact of these changes and predicting the potential response of ecosystems requires advanced knowledge of marine life and the achievement of uninterrupted and long-term observing programs. The Proteker program, no. 1044 of the French Polar Institute Paul-Émile Victor, has been developped in partnership with the National Nature Reserve of French Southern Territories in order to establish an observatory of coastal marine biodiversity in the Kerguelen Islands and evaluate the potential effects of environmental changes. Studies are carried out at different scales, from species to community and habitat levels, through multidisciplinary approaches that include hydrographic measurements, habitat mapping and species inventories, genetic, ecophysiological, and trophic analyses. This program aims at providing nature managers with scientifi c criteria to support the production and the achievement of conservation plans.
Date	2019
Titre des actes	Revue Scientifique Bourgogne-Franche-Comté Nature
Intitulé du colloque	15e Rencontres Bourgogne-Franche-Comté Nature, Changement climatique, humanité et biodiversité
Lieu	Dijon, France
Volume	29
Pages	273-284
Langue	Français
URL
zotero:itemfields_collections	Array
Date d'ajout	2019-04-12T08:44:10Z
Modifié le	2019-04-12T08:51:37Z

zotero:itemfields_key	2G6T3I5W
Version	679
Type	Article de revue
Titre	Application of the ecosystem service concept at a small-scale: The cases of coralligenous habitats in the North-western Mediterranean Sea
Auteur	Thierry de Ville d'Avray, Laure
Auteur	Ami, Dominique
Auteur	Chenuil, Anne
Auteur	David, Romain
Auteur	Féral, Jean-Pierre
Résumé	The understanding of ecosystem services is essential to support sustainable use and preservation of ecosystems. Coralligenous habitats, main contributors of the Mediterranean marine biodiversity, are yet understudied in term of services provided. This study presents an original small-scale approach to investigate the services provided by coralligenous habitats of a French study area consisting of two marine sites (Marseille and Port-Cros sites) in order to cover two contrasted anthropogenic pressure despite the small-scale. Our results are based on the opinions of 43 experts who ranked 15 services in terms of existence and level of importance for human wellbeing: supporting ecological functions were considered the most important, then provisioning and cultural services. Regulating services were considered uncertain due to a lack of knowledge. The small-scale approach highlighted a need for a referential frame to determine the existence of services (e.g. geographical and temporal scales, benefits and beneficiaries levels).
Publication	Marine Pollution Bulletin
Volume	138
Pages	160-170
Date	01/2019
Langue	en
DOI	10.1016/j.marpolbul.2018.10.057
ISSN	0025326X
Titre abrégé	Application of the ecosystem service concept at a small-scale
URL	https://linkinghub.elsevier.com/retrieve/pii/S0025326X18307690
Consulté le	2018-11-23T11:26:36Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-11-23T11:26:36Z
Modifié le	2018-11-23T11:29:04Z

zotero:itemfields_key	W3WZIRU3
Version	675
Type	Article de revue
Titre	A comparative analysis of metabarcoding and morphology-based identification of benthic communities across different regional seas
Auteur	Cahill, Abigail E.
Auteur	Pearman, John K.
Auteur	Borja, Angel
Auteur	Carugati, Laura
Auteur	Carvalho, Susana
Auteur	Danovaro, Roberto
Auteur	Dashfield, Sarah
Auteur	David, Romain
Auteur	Féral, Jean-Pierre
Auteur	Olenin, Sergej
Auteur	Šiaulys, Andrius
Auteur	Somerfield, Paul J.
Auteur	Trayanova, Antoaneta
Auteur	Uyarra, Maria C.
Auteur	Chenuil, Anne
Résumé	In a world of declining biodiversity, monitoring is becoming crucial. Molecular methods, such as metabarcoding, have the potential to rapidly expand our knowledge of biodiversity, supporting assessment, management, and conservation. In the marine environment, where hard substrata are more difficult to access than soft bottoms for quantitative ecological studies, Artificial Substrate Units (ASUs) allow for standardized sampling. We deployed ASUs within five regional seas (Baltic Sea, Northeast Atlantic Ocean, Mediterranean Sea, Black Sea, and Red Sea) for 12–26 months to measure the diversity and community composition of macroinvertebrates. We identified invertebrates using a traditional approach based on morphological characters, and by metabarcoding of the mitochondrial cytochrome oxidase I (COI) gene. We compared community composition and diversity metrics obtained using the two methods. Diversity was significantly correlated between data types. Metabarcoding of ASUs allowed for robust comparisons of community composition and diversity, but not all groups were successfully sequenced. All locations were significantly different in taxonomic composition as measured with both kinds of data. We recovered previously known regional biogeographical patterns in both datasets (e.g., low species diversity in the Black and Baltic Seas, affinity between the Bay of Biscay and the Mediterranean). We conclude that the two approaches provide complementary information and that metabarcoding shows great promise for marine monitoring. However, until its pitfalls are addressed, the use of metabarcoding in monitoring of rocky benthic assemblages should be used in addition to classical approaches rather than instead of them.
Publication	Ecology and Evolution
Date	2018-08-13
Langue	en
DOI	10.1002/ece3.4283
ISSN	20457758
URL	http://doi.wiley.com/10.1002/ece3.4283
Consulté le	2018-08-14T07:52:34Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-08-14T07:52:34Z
Modifié le	2018-08-14T08:00:49Z

zotero:itemfields_key	7TT9W935
Version	658
Type	Article de revue
Titre	Understanding processes at the origin of species flocks with a focus on the marine Antarctic fauna: Understanding the origins of species flocks
Auteur	Chenuil, Anne
Auteur	Saucède, Thomas
Auteur	Hemery, Lenaïg G.
Auteur	Eléaume, Marc
Auteur	Féral, Jean-Pierre
Auteur	Améziane, Nadia
Auteur	David, Bruno
Auteur	Lecointre, Guillaume
Auteur	Havermans, Charlotte
Résumé	Species flocks (SFs) fascinate evolutionary biologists who wonder whether such striking diversification can be driven by normal evolutionary processes. Multiple definitions of SFs have hindered the study of their origins. Previous studies identified a monophyletic taxon as a SF if it displays high speciosity in an area in which it is endemic (criterion 1), high ecological diversity among species (criterion 2), and if it dominates the habitat in terms of biomass (criterion 3); we used these criteria in our analyses. Our starting hypothesis is that normal evolutionary processes may provide a sufficient explanation for most SFs. We thus clearly separate each criterion and identify which biological (intrinsic) and environmental (extrinsic) traits are most favourable to their realization. The first part focuses on evolutionary processes. We highlight that some popular putative causes of SFs, such as key innovations or ecological speciation, are neither necessary nor sufficient to fulfill some or all of the three criteria. Initial differentiation mechanisms are diverse and difficult to identify a posteriori because a primary differentiation of one type (genetic, ecological or geographical) often promotes other types of differentiation. Furthermore, the criteria are not independent: positive feedbacks between speciosity and ecological diversity among species are expected whatever the initial cause of differentiation, and ecological diversity should enhance habitat dominance at the clade level. We then identify intrinsic and extrinsic factors that favour each criterion. Low dispersal emerges as a convincing driver of speciosity. Except for a genomic architecture favouring ecological speciation, for which assessment is difficult, high effective population sizes are the single intrinsic factor that directly enhances speciosity, ecological diversity and habitat dominance. No extrinsic factor appeared to enhance all criteria simultaneously but a combination of factors (insularity, fragmentation and environmental stability) may favour the three criteria, although the effect is indirect for habitat dominance. We then apply this analytical framework to Antarctic marine environments by analysing data from 18 speciose clades belonging to echinoderms (five unrelated clades), notothenioid fishes (five clades) and peracarid crustaceans (eight clades). Antarctic shelf environments and history appear favourable to endemicity and speciosity, but not to ecological specialization. Two main patterns are distinguished among taxa. (i) In echinoderms, many brooding, species-rich and endemic clades are reported, but without remarkable ecological diversity or habitat dominance. In these taxa, loss of the larval stage is probably a consequence of past Antarctic environmental factors, and brooding is suggested to be responsible for enhanced allopatric speciation (via dispersal limitation). (ii) In notothenioids and peracarids, many clades fulfill all three SF criteria. This could result from unusual features in fish and crustaceans: chromosome instability and key innovations (antifreeze proteins) in notothenioids, ecological opportunity in peracarids, and a genomic architecture favouring ecological speciation in both groups. Therefore, the data do not support our starting point that normal evolutionary factors or processes drive SFs because in these two groups uncommon intrinsic features or ecological opportunity provide the best explanation. The utility of the three-criterion SF concept is therefore questioned and guidelines are given for future studies.
Publication	Biological Reviews
Volume	93
Numéro	1
Pages	481-504
Date	02/2018
Langue	en
DOI	10.1111/brv.12354
ISSN	14647931
Titre abrégé	Understanding processes at the origin of species flocks with a focus on the marine Antarctic fauna
URL	http://doi.wiley.com/10.1111/brv.12354
Consulté le	2018-07-11T16:18:48Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-07-11T16:18:48Z
Modifié le	2018-07-11T16:23:17Z

zotero:itemfields_key	TL89SN8R
Version	660
Type	Article de revue
Titre	Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: The role of the last glaciation
Auteur	Díaz, Angie
Auteur	Gérard, Karin
Auteur	González-Wevar, Claudio
Auteur	Maturana, Claudia
Auteur	Féral, Jean-Pierre
Auteur	David, Bruno
Auteur	Saucède, Thomas
Auteur	Poulin, Elie
Éditeur	Chiang, Tzen-Yuh
Résumé	One of the most relevant characteristics of the extant Southern Ocean fauna is its resiliency to survive glacial processes of the Quaternary. These climatic events produced catastrophic habitat reductions and forced some marine benthic species to move, adapt or go extinct. The marine benthic species inhabiting the Antarctic upper continental shelf faced the Quaternary glaciations with different strategies that drastically modified population sizes and thus affected the amount and distribution of intraspecific genetic variation. Here we present new genetic information for the most conspicuous regular sea urchin of the Antarctic continental shelf, Sterechinus neumayeri. We studied the patterns of genetic diversity and structure in this broadcast-spawner across three Antarctic regions: Antarctic Peninsula, the Weddell Sea and AdeÂ lie Land in East Antarctica. Genetic analyses based on mitochondrial and nuclear markers suggested that S. neumayeri is a single genetic unit around the Antarctic continent. The species is characterized by low levels of genetic diversity and exhibits a typical star-like haplotype genealogy that supports the hypothesis of a single in situ refugium. Based on two mutation rates standardized for this genus, the Bayesian Skyline plot analyses detected a rapid demographic expansion after the Last Glacial Maximum. We propose a scenario of rapid postglacial expansion and recolonization of Antarctic shallow areas from a less ice-impacted refugium where the species survived the LGM. Considering the patterns of genetic diversity and structure recorded in the species, this refugium was probably located in East Antarctica.
Publication	PLOS ONE
Volume	13
Numéro	6
Pages	e0197611
Date	2018-6-6
Langue	en
DOI	10.1371/journal.pone.0197611
ISSN	1932-6203
Titre abrégé	Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean
URL	http://dx.plos.org/10.1371/journal.pone.0197611
Consulté le	2018-07-11T16:23:25Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-07-11T16:23:25Z
Modifié le	2018-07-11T16:26:19Z

zotero:itemfields_key	H6E9AF9P
Version	903
Type	Document
Titre	Hydrographical time series data of the littoral zone of Kongsfjorden, Svalbard 2013
Auteur	Fischer, Philipp
Auteur	Schwanitz, Max
Auteur	Brand, Markus
Auteur	Posner, Uwe
Auteur	Brix, Holger
Auteur	Baschek, Burkard
Résumé	The dataset contains temperature, salinity, oxygen saturation, chlorophyll A and turbidity data from the AWIPEV underwater observatory from the year 2013 in a temporal resolution of 1 hour. The cabled observatory is located in 12m water depth and comprises single or multiple sensors for a specific parameter (see https://www.awi.de/en/science/biosciences/shelf-sea-system-ecology/main-research-focus/cosyna/underwater-node-spitsbergen.html) For a detailed description of the data see associated metadatafile "metadata_svulobs_2013_hydrography.pdf".
Éditeur	PANGAEA - Data Publisher for Earth & Environmental Science
Date	2018
Langue	en
URL	https://doi.pangaea.de/10.1594/PANGAEA.896822
Consulté le	2019-04-12T16:36:21Z
Catalogue de bibl.	DataCite
Extra	type: dataset DOI: 10.1594/PANGAEA.896822
Date d'ajout	2019-04-12T16:36:21Z
Modifié le	2019-04-12T16:36:21Z

zotero:itemfields_key	W6RFX3KK
Version	661
Type	Article de revue
Titre	Unexpected absence of island endemics: Long-distance dispersal in higher latitude sub-Antarctic <i>Siphonaria</i> (Gastropoda: Euthyneura) species
Auteur	González-Wevar, Claudio A.
Auteur	Segovia, Nicolás I.
Auteur	Rosenfeld, Sebastián
Auteur	Ojeda, Jaime
Auteur	Hüne, Mathias
Auteur	Naretto, Javier
Auteur	Saucède, Thomas
Auteur	Brickle, Paul
Auteur	Morley, Simon
Auteur	Féral, Jean-Pierre
Auteur	Spencer, Hamish G.
Auteur	Poulin, Elie
Résumé	Aim: We assess biogeographical patterns, population structure and the range of species in the pulmonate genus Siphonaria across the sub-Antarctic. We hypothesized that locally endemic cryptic species will be found across the distribution of these direct-developing limpets in the sub-Antarctic. Location: The sub-Antarctic coasts of the Southern Ocean including South America, the Falkland/Malvinas, South Georgia, Kerguelen and Macquarie Islands. Methods: Multi-locus phylogenetic reconstructions, mtDNA time-calibrated divergence time estimations and population-based analyses of Siphonaria populations were used at the scale of the Southern Ocean. Results: We resolve two widely distributed lineages of Siphonaria (S. lateralis and S. fuegiensis) across the sub-Antarctic. MtDNA divergence time estimates suggest that they were separated around 4.0 Ma (3.0 to 8.0 Ma). Subsequently both species followed different evolutionary pathways across their distributions. Low levels of genetic diversity characterize the populations of both species, reflecting the role of Quaternary glacial cycles during their respective demographic histories, suggesting high levels of dispersal among geographically distant localities. Main conclusions: Siphonaria lateralis and S. fuegiensis constitute sister and broadly co-distributed species across the sub-Antarctic. Unexpected transoceanic similarities and low levels of genetic diversity in both these direct-developing species imply recurrent recolonization processes through long-distance dispersal to isolated sub-Antarctic islands. For such groups of Southern Ocean invertebrates, rafting may be more effective for long-distance dispersal than a free-living planktotrophic larval stage. This biogeographical model may explain why many marine species lacking a dispersal phase exhibit broad distributions, low genetic diversity and low population structure over thousands of kilometres.
Publication	Journal of Biogeography
Volume	45
Numéro	4
Pages	874-884
Date	04/2018
Langue	en
DOI	10.1111/jbi.13174
ISSN	03050270
Titre abrégé	Unexpected absence of island endemics
URL	http://doi.wiley.com/10.1111/jbi.13174
Consulté le	2018-07-11T16:26:24Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-07-11T16:26:24Z
Modifié le	2018-07-11T16:29:16Z

zotero:itemfields_key	YHADJG7E
Version	875
Type	Article de revue
Titre	Succession of Antarctic benthic algae (Potter Cove, South Shetland Islands): structural patterns and glacial impact over a four-year period
Auteur	Campana, Gabriela L.
Auteur	Zacher, Katharina
Auteur	Deregibus, Dolores
Auteur	Momo, Fernando Roberto
Auteur	Wiencke, Christian
Auteur	Quartino, María Liliana
Publication	Polar Biology
Volume	41
Numéro	2
Pages	377-396
Date	2/2018
Langue	en
DOI	10.1007/s00300-017-2197-x
ISSN	0722-4060, 1432-2056
Titre abrégé	Succession of Antarctic benthic algae (Potter Cove, South Shetland Islands)
URL	http://link.springer.com/10.1007/s00300-017-2197-x
Consulté le	2019-01-18T12:14:42Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2019-01-18T12:14:42Z
Modifié le	2019-01-18T12:14:42Z

zotero:itemfields_key	9HSSPWQ8
Version	662
Type	Article de revue
Titre	Benthic species of the Kerguelen Plateau show contrasting distribution shifts in response to environmental changes
Auteur	Guillaumot, Charlène
Auteur	Fabri-Ruiz, Salomé
Auteur	Martin, Alexis
Auteur	Eléaume, Marc
Auteur	Danis, Bruno
Auteur	Féral, Jean-Pierre
Auteur	Saucède, Thomas
Résumé	Marine life of the Southern Ocean has been facing environmental changes and the direct impact of human activities during the past decades. Benthic communities have particularly been affected by such changes although we only slowly understand the effect of environmental changes on species physiology, biogeography, and distribution. Species distribution models (SDM) can help explore species geographic responses to main environmental changes. In this work, we modeled the distribution of four echinoid species with contrasting ecological niches. Models developed for [2005–2012] were projected to different time periods, and the magnitude of distribution range shifts was assessed for recent-past conditions [1955–1974] and for the future, under scenario RCP 8.5 for [2050–2099]. Our results suggest that species distribution shifts are expected to be more important in a near future compared to the past. The geographic response of species may vary between poleward shift, latitudinal reduction, and local extinction. Species with broad ecological niches and not limited by biogeographic barriers would be the least affected by environmental changes, in contrast to endemic species, restricted to coastal areas, which are predicted to be more sensitive.
Publication	Ecology and Evolution
Volume	8
Numéro	12
Pages	6210-6225
Date	06/2018
Langue	en
DOI	10.1002/ece3.4091
ISSN	20457758
URL	http://doi.wiley.com/10.1002/ece3.4091
Consulté le	2018-07-11T16:29:23Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-07-11T16:29:23Z
Modifié le	2018-07-11T16:31:23Z

zotero:itemfields_key	V38EHFBH
Version	669
Type	Article de revue
Titre	Physiological and Genetic Adaptations to Diving in Sea Nomads
Auteur	Ilardo, Melissa A.
Auteur	Moltke, Ida
Auteur	Korneliussen, Thorfinn S.
Auteur	Cheng, Jade
Auteur	Stern, Aaron J.
Auteur	Racimo, Fernando
Auteur	de Barros Damgaard, Peter
Auteur	Sikora, Martin
Auteur	Seguin-Orlando, Andaine
Auteur	Rasmussen, Simon
Auteur	van den Munckhof, Inge C.L.
Auteur	ter Horst, Rob
Auteur	Joosten, Leo A.B.
Auteur	Netea, Mihai G.
Auteur	Salingkat, Suhartini
Auteur	Nielsen, Rasmus
Auteur	Willerslev, Eske
Résumé	Understanding the physiology and genetics of human hypoxia tolerance has important medical implications, but this phenomenon has thus far only been investigated in high-altitude human populations. Another system, yet to be explored, is humans who engage in breath-hold diving. The indigenous Bajau people (“Sea Nomads”) of Southeast Asia live a subsistence lifestyle based on breath-hold diving and are renowned for their extraordinary breath-holding abilities. However, it is unknown whether this has a genetic basis. Using a comparative genomic study, we show that natural selection on genetic variants in the PDE10A gene have increased spleen size in the Bajau, providing them with a larger reservoir of oxygenated red blood cells. We also find evidence of strong selection specific to the Bajau on BDKRB2, a gene affecting the human diving reflex. Thus, the Bajau, and possibly other diving populations, provide a new opportunity to study human adaptation to hypoxia tolerance. Video Abstract Download video (10MB)Help with mp4 files
Publication	Cell
Volume	173
Numéro	3
Pages	569-580.e15
Date	04/2018
Langue	en
DOI	10.1016/j.cell.2018.03.054
ISSN	00928674
URL	http://linkinghub.elsevier.com/retrieve/pii/S0092867418303866
Consulté le	2018-08-04T15:23:27Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-08-04T15:23:27Z
Modifié le	2018-08-04T15:45:51Z

zotero:itemfields_key	UPT5LYFJ
Version	680
Type	Article de revue
Titre	Sessile macrobenthos (Ochrophyta) drives seasonal change of meiofaunal community structure on temperate rocky reefs
Auteur	Losi, V.
Auteur	Sbrocca, C.
Auteur	Gatti, G.
Auteur	Semprucci, F.
Auteur	Rocchi, M.
Auteur	Bianchi, C.N.
Auteur	Balsamo, M.
Publication	Marine Environmental Research
Volume	142
Pages	295-305
Date	11/2018
Langue	en
DOI	10.1016/j.marenvres.2018.10.016
ISSN	01411136
URL	https://linkinghub.elsevier.com/retrieve/pii/S0141113618304100
Consulté le	2018-11-23T11:47:29Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-11-23T11:47:29Z
Modifié le	2018-11-23T11:47:29Z

zotero:itemfields_key	53MTJK47
Version	745
Type	Article de revue
Titre	The importance of wave exposure on the structural integrity of rhodoliths
Auteur	Melbourne, Leanne A.
Auteur	Denny, Mark W.
Auteur	Harniman, Robert L.
Auteur	Rayfield, Emily J.
Auteur	Schmidt, Daniela N.
Publication	Journal of Experimental Marine Biology and Ecology
Volume	503
Pages	109-119
Date	06/2018
Langue	en
DOI	10.1016/j.jembe.2017.11.007
ISSN	00220981
URL	https://linkinghub.elsevier.com/retrieve/pii/S0022098117303362
Consulté le	2018-11-26T17:22:13Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-11-26T17:22:13Z
Modifié le	2018-11-26T17:22:13Z

zotero:itemfields_key	SXSXJSZK
Version	877
Type	Article de revue
Titre	SfM-Based Method to Assess Gorgonian Forests (Paramuricea clavata (Cnidaria, Octocorallia))
Auteur	Palma, Marco
Auteur	Casado, Monica
Auteur	Pantaleo, Ubaldo
Auteur	Pavoni, Gaia
Auteur	Pica, Daniela
Auteur	Cerrano, Carlo
Publication	Remote Sensing
Volume	10
Numéro	7
Pages	1154
Date	2018-07-21
Langue	en
DOI	10.3390/rs10071154
ISSN	2072-4292
URL	http://www.mdpi.com/2072-4292/10/7/1154
Consulté le	2019-02-07T09:11:16Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2019-02-07T09:11:16Z
Modifié le	2019-02-07T09:11:16Z

zotero:itemfields_key	HPNQ967K
Version	718
Type	Article de revue
Titre	Carbon assimilation and transfer through kelp forests in the NE Atlantic is diminished under a warmer ocean climate
Auteur	Pessarrodona, Albert
Auteur	Moore, Pippa J.
Auteur	Sayer, Martin D. J.
Auteur	Smale, Dan A.
Publication	Global Change Biology
Volume	24
Numéro	9
Pages	4386-4398
Date	09/2018
Langue	en
DOI	10.1111/gcb.14303
ISSN	13541013
URL	http://doi.wiley.com/10.1111/gcb.14303
Consulté le	2018-11-26T15:25:07Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-11-26T16:02:55Z
Modifié le	2018-11-26T16:02:55Z

zotero:itemfields_key	72E722EY
Version	888
Type	Article de revue
Titre	Photogrammetric Surveys and Geometric Processes to Analyse and Monitor Red Coral Colonies
Auteur	Royer, Jean-Philip
Auteur	Nawaf, Mohamad
Auteur	Merad, Djamal
Auteur	Saccone, Mauro
Auteur	Bianchimani, Olivier
Auteur	Garrabou, Joaquim
Auteur	Ledoux, Jean-Baptiste
Auteur	Lopez-Sanz, Angel
Auteur	Drap, Pierre
Résumé	This article describes the set of photogrammetric tools developed for the monitoring of Mediterranean red coral Corallium rubrum populations. The description encompasses the full processing chain: from the image acquisition to the information extraction and data interpretation. The methods applied take advantage of existing tools and new, innovative and specific developments in order to acquire data on relevant ecological information concerning the structure and functioning of a red coral population. The tools presented here are based on: (i) automatic orientation using coded quadrats; (ii) use of non-photorealistic rendering (NPR) and 3D skeletonization techniques; (iii) computation of distances between colonies from a same site; and (iv) the use of a plenoptic approach in an underwater environment.
Publication	Journal of Marine Science and Engineering
Volume	6
Numéro	2
Pages	42
Date	2018-04-12
Langue	en
DOI	10.3390/jmse6020042
ISSN	2077-1312
URL	http://www.mdpi.com/2077-1312/6/2/42
Consulté le	2019-02-26T10:26:56Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2019-02-26T10:26:56Z
Modifié le	2019-02-26T10:29:06Z

zotero:itemfields_key	X7BSU9QX
Version	743
Type	Article de revue
Titre	Cellular stress responses to chronic heat shock and shell damage in temperate Mya truncata
Auteur	Sleight, Victoria A.
Auteur	Peck, Lloyd S.
Auteur	Dyrynda, Elisabeth A.
Auteur	Smith, Valerie J.
Auteur	Clark, Melody S.
Publication	Cell Stress and Chaperones
Volume	23
Numéro	5
Pages	1003-1017
Date	9/2018
Langue	en
DOI	10.1007/s12192-018-0910-5
ISSN	1355-8145, 1466-1268
URL	http://link.springer.com/10.1007/s12192-018-0910-5
Consulté le	2018-11-26T17:17:46Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-11-26T17:17:46Z
Modifié le	2018-11-26T17:17:46Z

zotero:itemfields_key	5MPDFXGM
Version	742
Type	Article de revue
Titre	Spatial variability in the diversity and structure of faunal assemblages associated with kelp holdfasts (Laminaria hyperborea) in the northeast Atlantic
Auteur	Teagle, Harry
Auteur	Moore, Pippa J.
Auteur	Jenkins, Helen
Auteur	Smale, Dan A.
Éditeur	Chapman, Maura (Gee) Geraldine
Publication	PLOS ONE
Volume	13
Numéro	7
Pages	e0200411
Date	2018-7-12
Langue	en
DOI	10.1371/journal.pone.0200411
ISSN	1932-6203
URL	https://dx.plos.org/10.1371/journal.pone.0200411
Consulté le	2018-11-26T17:16:44Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-11-26T17:16:44Z
Modifié le	2018-11-26T17:16:44Z

zotero:itemfields_key	SHI4WWQ7
Version	741
Type	Article de revue
Titre	Competition between co-occurring invasive and native consumers switches between habitats
Auteur	Zwerschke, Nadescha
Auteur	van Rein, Henk
Auteur	Harrod, Chris
Auteur	Reddin, Carl
Auteur	Emmerson, Mark C.
Auteur	Roberts, Dai
Auteur	O'Connor, Nessa E.
Éditeur	Higham, Timothy
Publication	Functional Ecology
Date	2018-10-08
Langue	en
DOI	10.1111/1365-2435.13211
ISSN	02698463
URL	http://doi.wiley.com/10.1111/1365-2435.13211
Consulté le	2018-11-26T17:15:21Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-11-26T17:15:21Z
Modifié le	2018-11-26T17:15:21Z

zotero:itemfields_key	R7AY272V
Version	745
Type	Article de revue
Titre	Insights from the Shell Proteome: Biomineralization to Adaptation
Auteur	Arivalagan, Jaison
Auteur	Yarra, Tejaswi
Auteur	Marie, Benjamin
Auteur	Sleight, Victoria A.
Auteur	Duvernois-Berthet, Evelyne
Auteur	Clark, Melody S.
Auteur	Marie, Arul
Auteur	Berland, Sophie
Publication	Molecular Biology and Evolution
Volume	34
Numéro	1
Pages	66-77
Date	01/2017
Langue	en
DOI	10.1093/molbev/msw219
ISSN	0737-4038, 1537-1719
Titre abrégé	Insights from the Shell Proteome
URL	https://academic.oup.com/mbe/article-lookup/doi/10.1093/molbev/msw219
Consulté le	2018-11-26T17:27:00Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-11-26T17:27:00Z
Modifié le	2018-11-26T17:27:00Z

zotero:itemfields_key	S3292KPX
Version	745
Type	Article de revue
Titre	Warming by 1°C Drives Species and Assemblage Level Responses in Antarctica’s Marine Shallows
Auteur	Ashton, Gail V.
Auteur	Morley, Simon A.
Auteur	Barnes, David K.A.
Auteur	Clark, Melody S.
Auteur	Peck, Lloyd S.
Publication	Current Biology
Volume	27
Numéro	17
Pages	2698-2705.e3
Date	09/2017
Langue	en
DOI	10.1016/j.cub.2017.07.048
ISSN	09609822
URL	https://linkinghub.elsevier.com/retrieve/pii/S0960982217309521
Consulté le	2018-11-26T17:25:25Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-11-26T17:25:25Z
Modifié le	2018-11-26T17:25:25Z

zotero:itemfields_key	7EC59S2S
Version	690
Type	Article de revue
Titre	The Coastal Observing System for Northern and Arctic Seas (COSYNA)
Auteur	Baschek, Burkard
Auteur	Schroeder, Friedhelm
Auteur	Brix, Holger
Auteur	Riethmüller, Rolf
Auteur	Badewien, Thomas H.
Auteur	Breitbach, Gisbert
Auteur	Brügge, Bernd
Auteur	Colijn, Franciscus
Auteur	Doerffer, Roland
Auteur	Eschenbach, Christiane
Auteur	Friedrich, Jana
Auteur	Fischer, Philipp
Auteur	Garthe, Stefan
Auteur	Horstmann, Jochen
Auteur	Krasemann, Hajo
Auteur	Metfies, Katja
Auteur	Merckelbach, Lucas
Auteur	Ohle, Nino
Auteur	Petersen, Wilhelm
Auteur	Pröfrock, Daniel
Auteur	Röttgers, Rüdiger
Auteur	Schlüter, Michael
Auteur	Schulz, Jan
Auteur	Schulz-Stellenfleth, Johannes
Auteur	Stanev, Emil
Auteur	Staneva, Joanna
Auteur	Winter, Christian
Auteur	Wirtz, Kai
Auteur	Wollschläger, Jochen
Auteur	Zielinski, Oliver
Auteur	Ziemer, Friedwart
Publication	Ocean Science
Volume	13
Numéro	3
Pages	379-410
Date	2017-05-10
Langue	en
DOI	10.5194/os-13-379-2017
ISSN	1812-0792
URL	https://www.ocean-sci.net/13/379/2017/
Consulté le	2018-11-26T15:36:15Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-11-26T15:36:15Z
Modifié le	2018-11-26T15:36:15Z

zotero:itemfields_key	X7Q2463P
Version	628
Type	Article de revue
Titre	Understanding processes at the origin of species flocks with a focus on the marine Antarctic fauna: Understanding the origins of species flocks
Auteur	Chenuil, Anne
Auteur	Saucède, Thomas
Auteur	Hemery, Lenaïg G.
Auteur	Eléaume, Marc
Auteur	Féral, Jean-Pierre
Auteur	Améziane, Nadia
Auteur	David, Bruno
Auteur	Lecointre, Guillaume
Auteur	Havermans, Charlotte
Résumé	Species flocks (SFs) fascinate evolutionary biologists who wonder whether such striking diversification can be driven by normal evolutionary processes. Multiple definitions of SFs have hindered the study of their origins. Previous studies identified a monophyletic taxon as a SF if it displays high speciosity in an area in which it is endemic (criterion 1), high ecological diversity among species (criterion 2), and if it dominates the habitat in terms of biomass (criterion 3); we used these criteria in our analyses. Our starting hypothesis is that normal evolutionary processes may provide a sufficient explanation for most SFs. We thus clearly separate each criterion and identify which biological (intrinsic) and environmental (extrinsic) traits are most favourable to their realization. The first part focuses on evolutionary processes. We highlight that some popular putative causes of SFs, such as key innovations or ecological speciation, are neither necessary nor sufficient to fulfill some or all of the three criteria. Initial differentiation mechanisms are diverse and difficult to identify a posteriori because a primary differentiation of one type (genetic, ecological or geographical) often promotes other types of differentiation. Furthermore, the criteria are not independent: positive feedbacks between speciosity and ecological diversity among species are expected whatever the initial cause of differentiation, and ecological diversity should enhance habitat dominance at the clade level. We then identify intrinsic and extrinsic factors that favour each criterion. Low dispersal emerges as a convincing driver of speciosity. Except for a genomic architecture favouring ecological speciation, for which assessment is difficult, high effective population sizes are the single intrinsic factor that directly enhances speciosity, ecological diversity and habitat dominance. No extrinsic factor appeared to enhance all criteria simultaneously but a combination of factors (insularity, fragmentation and environmental stability) may favour the three criteria, although the effect is indirect for habitat dominance. We then apply this analytical framework to Antarctic marine environments by analysing data from 18 speciose clades belonging to echinoderms (five unrelated clades), notothenioid fishes (five clades) and peracarid crustaceans (eight clades). Antarctic shelf environments and history appear favourable to endemicity and speciosity, but not to ecological specialization. Two main patterns are distinguished among taxa. (i) In echinoderms, many brooding, species-rich and endemic clades are reported, but without remarkable ecological diversity or habitat dominance. In these taxa, loss of the larval stage is probably a consequence of past Antarctic environmental factors, and brooding is suggested to be responsible for enhanced allopatric speciation (via dispersal limitation). (ii) In notothenioids and peracarids, many clades fulfill all three SF criteria. This could result from unusual features in fish and crustaceans: chromosome instability and key innovations (antifreeze proteins) in notothenioids, ecological opportunity in peracarids, and a genomic architecture favouring ecological speciation in both groups. Therefore, the data do not support our starting point that normal evolutionary factors or processes drive SFs because in these two groups uncommon intrinsic features or ecological opportunity provide the best explanation. The utility of the three-criterion SF concept is therefore questioned and guidelines are given for future studies.
Publication	Biological Reviews
Date	2017-08-10
Langue	en
DOI	10.1111/brv.12354
ISSN	14647931
Titre abrégé	Understanding processes at the origin of species flocks with a focus on the marine Antarctic fauna
URL	http://doi.wiley.com/10.1111/brv.12354
Consulté le	2017-10-11T17:57:54Z
Catalogue de bibl.	CrossRef
zotero:itemfields_collections	Array
Date d'ajout	2017-10-11T17:57:54Z
Modifié le	2017-10-11T18:17:47Z

zotero:itemfields_key	3L2SLGRQ
Version	745
Type	Article de revue
Titre	Biodiversity in marine invertebrate responses to acute warming revealed by a comparative multi-omics approach
Auteur	Clark, Melody S.
Auteur	Sommer, Ulf
Auteur	Sihra, Jaspreet K.
Auteur	Thorne, Michael A. S.
Auteur	Morley, Simon A.
Auteur	King, Michelle
Auteur	Viant, Mark R.
Auteur	Peck, Lloyd S.
Publication	Global Change Biology
Volume	23
Numéro	1
Pages	318-330
Date	01/2017
Langue	en
DOI	10.1111/gcb.13357
ISSN	13541013
URL	http://doi.wiley.com/10.1111/gcb.13357
Consulté le	2018-11-26T17:30:49Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-11-26T17:30:49Z
Modifié le	2018-11-26T17:30:49Z

zotero:itemfields_key	P3CQ522H
Version	635
Type	Article de revue
Titre	Regional and local environmental conditions do not shape the response to warming of a marine habitat-forming species
Auteur	Crisci, C.
Auteur	Ledoux, Jean-Baptiste
Auteur	Mokhtar-Jamaï, Kenza
Auteur	Bally, Marc
Auteur	Bensoussan, Nathaniel
Auteur	Aurelle, Didier
Auteur	Cebrian, E.
Auteur	Coma, R.
Auteur	Féral, Jean-Pierre
Auteur	La Rivière, M.
Auteur	Linares, C.
Auteur	López-Sendino, P.
Auteur	Marschal, C.
Auteur	Ribes, M.
Auteur	Teixidó, N.
Auteur	Zuberer, F.
Auteur	Garrabou, J.
Publication	Scientific Reports
Volume	7
Numéro	1
Date	12/2017
Langue	en
DOI	10.1038/s41598-017-05220-4
ISSN	2045-2322
URL	http://www.nature.com/articles/s41598-017-05220-4
Consulté le	2017-10-11T17:55:20Z
Catalogue de bibl.	CrossRef
Date d'ajout	2017-10-11T17:55:20Z
Modifié le	2017-10-13T11:09:05Z

zotero:itemfields_key	655TVNYY
Version	690
Type	Article de revue
Titre	First year of practical experiences of the new Arctic AWIPEV-COSYNA cabled Underwater Observatory in Kongsfjorden, Spitsbergen
Auteur	Fischer, Philipp
Auteur	Schwanitz, Max
Auteur	Loth, Reiner
Auteur	Posner, Uwe
Auteur	Brand, Markus
Auteur	Schröder, Friedhelm
Publication	Ocean Science
Volume	13
Numéro	2
Pages	259-272
Date	2017-04-04
Langue	en
DOI	10.5194/os-13-259-2017
ISSN	1812-0792
URL	https://www.ocean-sci.net/13/259/2017/
Consulté le	2018-11-26T15:35:17Z
Catalogue de bibl.	Crossref
zotero:itemfields_collections	Array
Date d'ajout	2018-11-26T15:35:17Z
Modifié le	2018-11-26T15:35:17Z

zotero:itemfields_key	7CH57K34
Version	745
Type	Article de revue
Titre	Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach
Auteur	Fonseca, V. G.
Auteur	Sinniger, F.
Auteur	Gaspar, J. M.
Auteur	Quince, C.
Auteur	Creer, S.
Auteur	Power, Deborah M.
Auteur	Peck, Lloyd S.
Auteur	Clark, Melody S.
Publication	Scientific Reports
Volume	7
Numéro	1
Date	12/2017
Langue	en
DOI	10.1038/s41598-017-06687-x
ISSN	2045-2322
Titre abrégé	Revealing higher than expected meiofaunal diversity in Antarctic sediments
URL	http://www.nature.com/articles/s41598-017-06687-x
Consulté le	2018-11-26T17:28:59Z
Catalogue de bibl.	Crossref
Date d'ajout	2018-11-26T17:28:59Z
Modifié le	2018-11-26T17:28:59Z

zotero:itemfields_key	W92ARIX3
Version	641
Type	Article de revue
Titre	Following the Antarctic Circumpolar Current: patterns and processes in the biogeography of the limpet Nacella (Mollusca: Patellogastropoda) across the Southern Ocean
Auteur	González-Wevar, Claudio
Auteur	Hüne, Mathias
Auteur	Segovia, Nicolas
Auteur	Nakano, Tomoyuki
Auteur	Spencer, Hamish
Auteur	L. Chown, Steven
Auteur	Saucède, Thomas
Auteur	Johnstone, Glenn
Auteur	Mansilla, Andres
Auteur	Poulin, Elie
Résumé	We use an integrative biogeographical approach to further understand the evolution of an important Southern Ocean marine benthic element, the limpet genus Nacella (Mollusca: Patellogastropoda). Southern Ocean. We used multi-locus time-calibrated phylogeny of Nacella at the scale of the whole Southern Ocean to elucidate the underlying processes involved in the origin and diversification of the genus. Divergence-time estimates suggest that soon after its origin during the mid-Miocene (c. 12.5 Ma), Nacella separated into two main lineages currently distributed in (1) South America and (2) Antarctica and the sub-Antarctic islands. We identified two pulses of diversification, during the late Miocene (8 to 5.5 Ma) and the Pleistocene (< 1 Ma). Major periods of climatic and oceanographical change strongly affected the biogeography of Nacella and demonstrate both the long- and short-term influence of the Antarctic Circumpolar Current across the Southern Ocean. Our analyses support the validity of all currently recognized Nacella species and reveal a new South-American lineage. This work constitutes the most detailed molecular-based study of an ecologically important, near-shore invertebrate Southern Ocean group and in so doing contributes to the improved understanding of the underlying patterns and processes in the origin and diversification of marine benthic fauna across this globally important region.
Publication	Journal of Biogeography
Volume	44
Pages	861-874
Date	January 1, 2017
DOI	10.1111/jbi.12908
Titre abrégé	Following the Antarctic Circumpolar Current
URL
Catalogue de bibl.	ResearchGate
zotero:itemfields_collections	Array
Date d'ajout	2017-10-27T11:34:45Z
Modifié le	2017-10-27T11:34:45Z